PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009784451.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 521aa    MW: 58042.9 Da    PI: 6.6085
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009784451.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS455.82.7e-1391515211374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+++L++cA+avs+gdl  aq l+++l++++s +g+p+qRl ay++e+L arla s+s+++k+l+++e +   s e l+++++++e++P++kf++
  XP_009784451.1 151 LKHVLIACAKAVSDGDLLTAQVLISELRQMVSVSGEPIQRLGAYILEGLVARLAASGSSICKSLRCKEPA---SFELLSYMHMLYEICPYFKFGY 242
                     689******************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN aI ea++ e+rvHiiDf+i qG QW++L+qa+a+Rp+gpp++R+Tg+++++s   +   l+ +g+rL+k+A++++vpfef++ +a + +d
  XP_009784451.1 243 MSANGAIAEAMKDENRVHIIDFQIAQGSQWVTLIQAFAARPGGPPHIRVTGIDDSTSAyaRGGGLNIVGQRLSKLAKAFKVPFEFHA-AAISGSD 336
                     ******************************************************998899999************************.8999*** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L ++pgEalaVn+++ lh+++desvs+e++rd +L++vk+l+Pkvv++veqe+++n++ F+ rfle+l+yy+a+f+s++++lpr ++eri
  XP_009784451.1 337 VQVENLGIQPGEALAVNFAFTLHHIPDESVSTENHRDGLLRMVKNLNPKVVTLVEQESNTNTAAFFPRFLETLDYYTAMFESIDMTLPRGHKERI 431
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE+++l+r++vn++aceg er+erhe l+kW++r+++aGF+p+pls+ +++++k+ll+ +++  yr+ee++g+l+lgW++r Lv+ +aW+
  XP_009784451.1 432 NVEQHCLARDVVNIIACEGIERVERHELLGKWKSRFRMAGFSPYPLSSLVNATIKRLLESYSD-KYRLEERDGALYLGWMNRDLVASCAWK 521
                     **************************************************************5.5*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098571.006125502IPR005202Transcription factor GRAS
PfamPF035149.2E-137151521IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MQASQRLRRS PMSNTLYYQP VQKAEACCLP QFQTLDNHLS YINGSHGFYH SPSTASFSSN  60
GSSICHQESQ PYLSDVRQSS ETTNYGSPTS GSCITDGAND FMHKLKELET VMLGPDSDFL  120
ESYDNSLPNS VASTEINSWR QMMEAMPRRD LKHVLIACAK AVSDGDLLTA QVLISELRQM  180
VSVSGEPIQR LGAYILEGLV ARLAASGSSI CKSLRCKEPA SFELLSYMHM LYEICPYFKF  240
GYMSANGAIA EAMKDENRVH IIDFQIAQGS QWVTLIQAFA ARPGGPPHIR VTGIDDSTSA  300
YARGGGLNIV GQRLSKLAKA FKVPFEFHAA AISGSDVQVE NLGIQPGEAL AVNFAFTLHH  360
IPDESVSTEN HRDGLLRMVK NLNPKVVTLV EQESNTNTAA FFPRFLETLD YYTAMFESID  420
MTLPRGHKER INVEQHCLAR DVVNIIACEG IERVERHELL GKWKSRFRMA GFSPYPLSSL  480
VNATIKRLLE SYSDKYRLEE RDGALYLGWM NRDLVASCAW K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-591555218375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0145720.0BT014572.1 Lycopersicon esculentum clone 134027R, mRNA sequence.
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784447.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_009784449.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_009784450.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_009784451.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A0V0IJG70.0A0A0V0IJG7_SOLCH; Putative scarecrow-like transcription factor PAT1-like
STRINGPGSC0003DMT4000156950.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein